A tip. You can always raid friendlies for loot and you won't loose any faction, and they won't shoot back, only as long as you stun them and not kill.
So equip a team with grapplers only and go get that gear. The friendly 'enemy' will run up to you and fall unconscious. Collect their gear then... all you can carry, If they come around your guys will stun them again, and gain experience from it.
Eventually abort the mission, and you keep whatever you are carrying.
The only problem is that stun grapples are hard to come by at the start of the game, but you can fix that by raiding their supplier. You can also pick up the occasional armor from Marsec, and their mini-launchers.
Be careful not to arm yourself with the stuff you pick up or you'll likely kill someone.
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