This reminds me of something I posted earlier, a similar situation which I *think* I've experienced:
plenty of alien containment, normally no live aliens inside them, and still stunned aliens that die after a mission due to "lack of containment". I then proceeded to destroy some containment facilities, built new ones instead, thus solving the problem. But it's been a few years since I played it, so I'm not certain anymore that this really happened (there's a small possibility that there were live aliens, but of a type I'd already researched, I have no idea whether these are kept alive at your base???)
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A sickened, sensitive shadow writhing in hands that are not hands, and whirled blindly past ghastly midnights of rotting creation (Nyarlathotep, H.P. Lovecraft)
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