I advise against using NTFS for your system partition - in case your system gets messed up, you may have problems with getting your data and whatnot out of the damn thing. Been there, done that, and believe me - it's not an experience I'd like to repeat.
FAT32 can be read by Windows 9x, some versions of DOS and pretty much every Linux version.
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"God. Can't you people see I'm trying to commit a crime against science and nature here?"
-- Reed Richards
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