Just use GIMP, more specifically its XCF format.
You can use layers with that, so you have 1 layer that divides the map into squares, another layer where you fill in the dungeon layout, another where you indicate doors and other important locations, and add text layers with any useful notes you might have.
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"God. Can't you people see I'm trying to commit a crime against science and nature here?"
-- Reed Richards
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