Actually, I discovered earlier that you can capture those big aliens. Get 4 soldiers with Stun Rods, surround a Sectopod and have them all stun it twice. It should work.
The problem is that you can only collect it at the end of the mission, so you have to keep it stunned until then. At this point, it's yours.
I DO NOT recommend trying to stun a Cyberdisk with Flying Suits, as it explodes when it thinks it had died. This includes it being stunned, so watch out!
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